PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003073-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 185aa MW: 21513.8 Da PI: 4.7673

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003073-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.7	8.3e-16	82	139	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +++rr+++NRe+ArrsR RK+ ++eL v L +eN++L+++l++ ++ +++ +e AHYPO_003073-RA 82 RKQRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLIDKLNHVTESHDRVLQE 139 689*********************************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-14	78	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	80	143	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-12	82	155	No hit	No description
SuperFamily	SSF57959	8.75E-14	82	132	No hit	No description
Pfam	PF00170	1.4E-13	82	140	IPR004827	Basic-leucine zipper domain
CDD	cd14702	9.88E-20	83	134	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MQSNDVTGFQ YLVPPNESPY PYYPGMVQND LSPFQINKYT NLLYNLQIGS NLQELTPHPS 60 CFSNNSTSDE ADEQQLSIIN ERKQRRMISN RESARRSRMR KQRHLDELWS QVVWLRNENH 120 QLIDKLNHVT ESHDRVLQEN VQLKEEASEL RQMVTDMQLS SPYSTLGDLE EVTNVVYLGD 180 ETPN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	101	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00389	DAP	Transfer from AT3G30530	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694542.1	1e-121	PREDICTED: basic leucine zipper 43
Swissprot	Q9FMC2	3e-48	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0K9RIT1	1e-92	A0A0K9RIT1_SPIOL; Uncharacterized protein
STRING	XP_010694542.1	1e-120	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	7e-56	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	AHYPO_003073-RA

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]