PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003133-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family DBB
Protein Properties Length: 190aa    MW: 21533.6 Da    PI: 8.366
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003133-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.4e-062757434
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                     ++C+ +e   + +fC  ++  lC +C  + H
  AHYPO_003133-RA 27 TVCDVCETPVAVFFCPADEAALCLSCDHKVH 57
                     68*************************9988 PP
2zf-B_box25.52.7e-0879115537
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                      +C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  AHYPO_003133-RA  79 RCDICENAPAFFYCEIDGTSLCLQCDMRVHVGgkrtH 115
                      8**************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-72471IPR000315B-box-type zinc finger
PROSITE profilePS501199.7412471IPR000315B-box-type zinc finger
CDDcd000216.72E-52771No hitNo description
SMARTSM003362.1E-1175120IPR000315B-box-type zinc finger
PROSITE profilePS501199.00175120IPR000315B-box-type zinc finger
PfamPF006431.5E-678115IPR000315B-box-type zinc finger
CDDcd000214.95E-779108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRRNQMNDGE ELQIRGKKFR FIRQMRTVCD VCETPVAVFF CPADEAALCL SCDHKVHTCN  60
RLANRHVRLR LSAPKPFSRC DICENAPAFF YCEIDGTSLC LQCDMRVHVG GKRTHGRYLL  120
FRQQVELPAS ISMDHTPAGR ETNANVQSYR DPSSVLAPTP LGNEQTDRKM IDLNIKPHRL  180
HDSSSNSQQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022885681.14e-64B-box zinc finger protein 18-like isoform X3
SwissprotC0SVM52e-58BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2P2LM042e-62A0A2P2LM04_RHIMU; B-box zinc finger protein 19-like
TrEMBLA0A2P5DE443e-62A0A2P5DE44_PARAD; B-box-type zinc finger
TrEMBLU5GHK52e-62U5GHK5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s11900.14e-63(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.17e-61DBB family protein