PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003136-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 1636aa    MW: 179362 Da    PI: 6.06
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003136-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-0716131635326
                       S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                       ++ C+ f+++G+Ck G++Ck+ H+
  AHYPO_003136-RA 1613 QRVCK-FYESGYCKKGASCKYLHP 1635
                       789**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.245.107.9E-22182262IPR003121SWIB/MDM2 domain
SuperFamilySSF475922.07E-18182260IPR003121SWIB/MDM2 domain
PfamPF022011.7E-11187258IPR003121SWIB/MDM2 domain
PROSITE profilePS5136022.515308441IPR004343Plus-3 domain
SMARTSM007191.1E-36308418IPR004343Plus-3 domain
SuperFamilySSF1590423.79E-26309437IPR004343Plus-3 domain
PfamPF031266.7E-18313416IPR004343Plus-3 domain
SuperFamilySSF552778.63E-17627686IPR003169GYF domain
PROSITE profilePS5082915.09630684IPR003169GYF domain
CDDcd000721.00E-14630684No hitNo description
SMARTSM004447.0E-15631686IPR003169GYF domain
Gene3DG3DSA:3.30.1490.406.6E-17631686IPR003169GYF domain
PfamPF022131.5E-11632677IPR003169GYF domain
PRINTSPR012171.3E-1213331345No hitNo description
PRINTSPR012171.3E-1213581379No hitNo description
PRINTSPR012171.3E-1213801396No hitNo description
PRINTSPR012171.3E-1214031420No hitNo description
PRINTSPR012171.3E-1214211446No hitNo description
PROSITE profilePS5010315.74116101635IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-616101634IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-516131635IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-416141634IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1636 aa     Download sequence    Send to blast
MDRIMMLGWH LCNFCQRNAV FMCYTCPYSL CKKCVKQADI FCVRGNKGFC KTCMMTIMLI  60
ENIPHETKEQ VQVDFDDTRN WEYLFKVYWI YLKEKESLTL DDLIRATNSR NLYGVENNNF  120
QQQRVETGIT NISEVSSSNV QLETNAAKRR KTRKQPQLLN LDSDNVEQSD MKEEPGFYAA  180
ADWATKELLE FVAHMKNGET SVLSQFDVRT LLLDYVRNNN LYDPRRNCQI ICDKRLESLF  240
GKERVGPFEM LRMLEYHFKE ESHTNGVGPP SGKLEEDKFF GNSRETRWQT RRKAEEKDRQ  300
VKLDSYAAID VHNINLIYLK RSSLEKLMGD VVNFHDKVVG SVVRIRISSN DQKQDMFRLV  360
RIIGTSKGVE SSKVGDKTDC SILQILNLNK IEDISIDSIS DQDFSEDECR RLRQSIKLGL  420
VESMTVGEIQ EKAIALQTVR VNDVLETEIK RLSHLKDRAK YVEKIELLKT SEERIRRIQN  480
IPDVHADPRM DPSYGSDDDS GEPDKKKQDV SVMPKYSTSN AKDMELISPV RAGDSSIEER  540
ILANGERNRK LSAKFHVGKV KSTTRPFEPS HKTENVDALK VLEEFNKRAD LGVVSRDHGI  600
ATIECISQTA SDSSAISSRV LLVSDISELE KMWHYRDPSG KVQGPFCMLQ LRKWDSSGFF  660
PTDLRVWKIS ETPDQSILLT DALRKQQSRE PESYVEQLPS LPQFDGGVAS VERKANSNEE  720
LSSNTEAPSV GDKSNEEGCN KNLTVTSDAI YLPMRTCNSL LLSENQRGIG QSGLDMKARL  780
IESLFDTEEP SSIATPTGSS ETMHITNFES SYPSTSSSKS DNVDLESQVV KSQPSSPNAV  840
QEDSENGWGL ISNGAKASDL SNRTPQSDPE DLKSLTSKNS NKVASLVSKD LDTDCGRGSS  900
ATQFSDPVSF MPKIEIKDTN DHDRENKHLG VSSCYQQESG TGNAVSVGID ASITANAAIK  960
MENDGLKPYA SEIRHSVSSD VSGQVSEAIW SSISVGTDLS IFPGNNLNME SRKMLSVEDK  1020
HYNTSNVPEH SSGTSWSTIS GGIVFSDLHS TVTKLETDRI ETPAVDIKAC VGANIAQHSG  1080
TGWSSLSGGI EFSDLPTTSL KIGEASTGHL LGDKNSVLLN VSGQDSCISW STASSLGREV  1140
HLPDVASEWG AYSTTKTVEF NSGPSVKLTE ASSDHANPAS HSCQLTMNLF DTSSWQPIEL  1200
STLGDESVSD LLSEVEAMES LRGMSSPTSR MNCGDGSIDS PGDDCFSPLG GLSPHLDPGK  1260
NDALSSTADM HFHLQPNITD QSHGSFTVIH DLPNTSCNLS IGKPRMEEVK PAIVSMPLQN  1320
FVSQSSMSVV LPPLPPPSQP SMSLPSQQLP SSATLTLPTI AASLPQPSPP ASLTTVQLPS  1380
IPPPQPPASI PLPSPPTSVP PTPPQPPASL PSPPPPPPPP EEKLPSPPHP PPPRSQPQPP  1440
STLSRDRPSS PREEGELDPA TLPMHHKKVG CHLQPSLQTA RVNVATAESW KQSSENSSTN  1500
LEPAGHPGGK FSATGSILGT PNLHWNTGPG MAAALSVNPH WTASVGSQGT RVSSQISPRY  1560
SHNVGRHSSS KDRNHHHHGV DSGFSKSRPT SWNRQSSFGG GGGGSSRPPP RGQRVCKFYE  1620
SGYCKKGASC KYLHP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718112.10.0zinc finger CCCH domain-containing protein 44
TrEMBLA0A0K9QZQ00.0A0A0K9QZQ0_SPIOL; Uncharacterized protein
STRINGXP_010680076.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-139nucleic acid binding;zinc ion binding;DNA binding