PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003143-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 291aa    MW: 32195.9 Da    PI: 8.1427
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003143-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18205239135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  AHYPO_003143-RA 205 CSHCGVHKTPQWRAGPMGAKTLCNACGVRFKSGRL 239
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-7518288IPR016679Transcription factor, GATA, plant
SuperFamilySSF577163.09E-14197261No hitNo description
PROSITE profilePS5011411.292199235IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-17199253IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-15203237IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-14204252No hitNo description
PfamPF003201.5E-16205239IPR000679Zinc finger, GATA-type
PROSITE patternPS003440205230IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MECIGKSGFG PKQQQQNMED FSTIFSPISQ NFNGGSSIIT PVSGDDFFVD QLLNLNNEEE  60
EENEPKIDFL VKQQQFQDNI QENIISSFSS SPLDSVLSVP EEEAQLEWLS EFVEESFSQF  120
SNPYPPGFVK SKPNKEVSNG LSLFFTPPSH SKSRRSKRAR TGGRVWSNSV SDPSSTSPSS  180
PELGPFKKHK KKENGSVSNG LQRRCSHCGV HKTPQWRAGP MGAKTLCNAC GVRFKSGRLL  240
PEYRPACSPT FSSELHSNSH RKVLEMRKKK EMVTGQPEPG SMSHPVSSFG *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679831.19e-98PREDICTED: GATA transcription factor 7
SwissprotQ9FH572e-52GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0K9QER58e-83A0A0K9QER5_SPIOL; Uncharacterized protein
STRINGXP_010679831.14e-97(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-45GATA transcription factor 5