PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003148-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10930.6 Da    PI: 10.2578
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003148-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.51.1e-251463148
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                     krien++ rqvtfskRrngi+KKA+ELSvLCda+v++ii+s+  t ++ye
  AHYPO_003148-RA 14 KRIENTTSRQVTFSKRRNGIIKKAQELSVLCDAKVSIIIISNssTKRVYE 63
                     79**************************************8611455665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-32665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.301666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-30792IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-24828IPR002100Transcription factor, MADS-box
PfamPF003192.0E-221563IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-242843IPR002100Transcription factor, MADS-box
PfamPF036282.9E-43685IPR005309PapG, chaperone-binding
PRINTSPR004044.5E-244364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSEAKMGRGK IEIKRIENTT SRQVTFSKRR NGIIKKAQEL SVLCDAKVSI IIISNSSTKR  60
VYEHTTLGVS LKEIYDEYQR AEGIDLWHKQ NQVFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-14678172MEF2 CHIMERA
6byy_B1e-14678172MEF2 CHIMERA
6byy_C1e-14678172MEF2 CHIMERA
6byy_D1e-14678172MEF2 CHIMERA
6bz1_A1e-14678172MEF2 CHIMERA
6bz1_B1e-14678172MEF2 CHIMERA
6bz1_C1e-14678172MEF2 CHIMERA
6bz1_D1e-14678172MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718109.16e-42LOW QUALITY PROTEIN: MADS-box protein CMB2-like
SwissprotQ424986e-37CMB2_DIACA; MADS-box protein CMB2
TrEMBLE0D3G43e-35E0D3G4_SILLB; Flower buds-specific protein SlAP3Y
TrEMBLE2J8W73e-35E2J8W7_SILLA; Flower buds specific protein AP3Y
TrEMBLQ7X9P03e-35Q7X9P0_SILDC; Flower buds-specific protein SiAP3Y
TrEMBLQ7X9P43e-35Q7X9P4_SILLA; Flower buds-specific protein SlAP3Y
STRINGXP_010679828.13e-35(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-28MIKC_MADS family protein