PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003153-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

SRS

Protein Properties

Length: 267aa MW: 28883 Da PI: 7.1141

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003153-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	100.9	2.4e-31	81	134	3	56
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqql 56 g++sCqdCGnqakkdC ++RCRtCCks+gfdCathvkstWvpa+ rrer+q+l AHYPO_003153-RA 81 GGSISCQDCGNQAKKDCIYMRCRTCCKSQGFDCATHVKSTWVPASVRRERHQKL 134 5789**********************************************8875 PP
2	DUF702	84.2	3.3e-26	139	193	100	154
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +e+ ++P+ev+ +a frcv+vss+dd+eee+aYqtav+igGhvfkGiLydqG+++ AHYPO_003153-RA 139 MEVGNFPAEVNYPATFRCVKVSSMDDNEEEYAYQTAVNIGGHVFKGILYDQGPDH 193 78889************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.3E-28	83	135	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-27	85	126	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	1.3E-23	142	192	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	7.8E-27	144	191	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MAGFFSLGNN SIHNKTSINS YLWHYYHHLQ LHHQHSISAV DSQDHEITRS EDNNNSNPKI 60 NNNLMMMRMS SSGSGSGSGS GGSISCQDCG NQAKKDCIYM RCRTCCKSQG FDCATHVKST 120 WVPASVRRER HQKLLQGGME VGNFPAEVNY PATFRCVKVS SMDDNEEEYA YQTAVNIGGH 180 VFKGILYDQG PDHPNQQVGT SSPTYALGGG GGESSTMGPT TSMGGPAPAM PTSSSQNVGY 240 LDPSYYPLPL NAYLPPGTPF FPNPRP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021718103.1	2e-93	protein SHI RELATED SEQUENCE 1-like isoform X1
Refseq	XP_021718104.1	2e-93	protein SHI RELATED SEQUENCE 1-like isoform X2
Swissprot	Q9SD40	4e-55	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	1e-55	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2C9WN11	4e-64	A0A2C9WN11_MANES; Uncharacterized protein
STRING	cassava4.1_032269m	7e-65	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	9e-54	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	AHYPO_003153-RA

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]