PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003169-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 171aa    MW: 19203.2 Da    PI: 4.9567
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003169-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.31.1e-153090363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     +l++ +r+q+NRe+ArrsR+RK++ ++ L+  v eL+a+N++  + ++  ++++  +++e+
  AHYPO_003169-RA 30 DLRKRKRMQSNRESARRSRLRKQKHLDDLTAQVIELKAQNTKILSAINATTQLYLDMEAEN 90
                     58999************************************************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-112380No hitNo description
SMARTSM003387.0E-182892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.0023081IPR004827Basic-leucine zipper domain
PfamPF001702.9E-123190IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.62E-113283No hitNo description
CDDcd147021.21E-183383No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MMASSSSSIQ PQQTQNNSSG SEADPQQIMD LRKRKRMQSN RESARRSRLR KQKHLDDLTA  60
QVIELKAQNT KILSAINATT QLYLDMEAEN SVFRAQFGEL SNRLQSLNDI INCLSISNNN  120
GVRTATNSES YDQESFESFD LDFGDGFSMN SWGFSFANYP IMATQDAFMC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13152RKRKRMQSNRESARRSRLRKQK
24450RRSRLRK
34451RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714573.16e-86bZIP transcription factor 11-like
SwissprotC0Z2L54e-39BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0K9QG847e-51A0A0K9QG84_SPIOL; Uncharacterized protein
STRINGXP_010679785.12e-74(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-40basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]