PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003219-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 306aa    MW: 32210.1 Da    PI: 6.9331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003219-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.3e-10180224554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  AHYPO_003219-RA 180 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 224
                      99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-14173229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-11173229No hitNo description
PROSITE profilePS5088816.526175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-15177229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7180224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-12181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MANNQPHHHH HHEGLGDEFF EQILSVPGYN TGGNDGSGFV GSGSGGDGSS ILLGLGPGTG  60
SGHGGVNVGL GIGGFRGGMG LGLPLGLNLD HGSSSTHGGG DGGNVSSSSR INENDSMHLT  120
NLFPAFGHHL QPQPLRPAPP IQIHQTFQGQ ATAGPTPAVS HPPAIRPRVR ARRGQATDPH  180
SIAERLRRER IAERMKALQE LVPSCNKTDR AAMLDEIVDY VKFLRLQVKG EGVEGAQAAW  240
EKWSNDGTEQ QVAKLMEQDV GAAMQFLQSK ALCIMPISLA SAIFRSQPPP TDPPSMIKPE  300
TNPPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674832.11e-148PREDICTED: transcription factor UNE12
SwissprotO227682e-73UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0K9RX001e-135A0A0K9RX00_SPIOL; Uncharacterized protein
STRINGXP_010674832.11e-147(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]