PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003221-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 419aa    MW: 45286.4 Da    PI: 6.4475
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003221-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.44.9e-16208260355
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k+l  ++++
  AHYPO_003221-RA 208 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQK 260
                      68*****************************************9888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-13203262No hitNo description
SMARTSM003386.6E-20206270IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.599208262IPR004827Basic-leucine zipper domain
PfamPF001702.1E-14209259IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11210259No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
PfamPF124986.0E-39277404IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDRVFSVGDI SDQFWSSPPP PPPSQPPGGD SKMNRSASEW AFERFLQEAS PISDTSSSKS  60
LAENDVVEIR DSLHQSNNDI TSKMPSFNHQ GSSSFPVDSD EYHAILKSKL DLACAAVAMT  120
RAPFVINQNQ SSAGVAESAT QGSVESKVAS HLPSKGSQDK DAKPVGIPSL PAMPKKPLTQ  180
EKQAMSYSSG QSDDDDLEGE NETTDPADVK RVRRMLSNRE SARRSRRRKQ AHLTELETQV  240
SQLRVENSSL LKRLTDISQK FNDAAVDNRV LKADVETLRA KVKMAEETVK RITGMNPLLQ  300
AMSEISTMGM APFGGSPSSD SADAAVPVQD DPKQPHFYPP IDNPLPGPNP RVDNGVNDVI  360
SSLDHHVLQN SAPQLLGGSK IGRTASMQRV ASLEHLQKRI RGGMNQGSPQ HGHGGPDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229RRSRRRKQ
2224229SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674829.10.0PREDICTED: light-inducible protein CPRF2
SwissprotQ990901e-113CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0K9RTS90.0A0A0K9RTS9_SPIOL; Uncharacterized protein
STRINGXP_010674829.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.28e-69bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]