PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003251-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 351aa    MW: 39595.4 Da    PI: 10.6439
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003251-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32282340259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++d +++++tYegeHnh 
  AHYPO_003251-RA 282 NDGYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCSDDSSMLIVTYEGEHNHA 340
                      7*************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.0E-15235279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-34269340IPR003657WRKY domain
PROSITE profilePS5081131.146276339IPR003657WRKY domain
SuperFamilySSF1182908.11E-28279340IPR003657WRKY domain
SMARTSM007741.5E-40281341IPR003657WRKY domain
PfamPF031061.9E-28282339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEIELANKVA IESGNRVVAI LSQKQELQTR NLMAQTSETV SKFNRVVSLL TKKGFGHAKM  60
RRSKKLPSSL PEKLFLETPH LYPKSQPKTE QFLPKSNFLK NPCSETPQNP KISSQFAEKP  120
LIDVTLSVKP PTQIPTLQKP TQNLPFIHQQ QFQQHQQQHF QQQMLQRFQL QQQMMNNNTS  180
RSGVNLKFDG SNTMSSNRSF LSSLSMDNSV ASLSMNSFQL IGLPQSSDPN SHHLRRKCVK  240
GEDGSVKCGS TSKCHCSKKR KMRIKKSIKV PAVSNKIADI PNDGYSWRKY GQKPIKGSPY  300
PRGYYKCSSM RGCPARKHVE RCSDDSSMLI VTYEGEHNHA KFIASHSSQT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-252773391071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675100.11e-162PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU65e-97WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A0K9R9P01e-149A0A0K9R9P0_SPIOL; Uncharacterized protein
STRINGXP_010675100.11e-162(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.12e-77WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]