PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003313-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 444aa MW: 49223.1 Da PI: 8.2002

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003313-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	51	95	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E++++++a k++G W++I +++g +t+ q++s+ qk+ AHYPO_003313-RA 51 RERWTEDEHKRFLEALKMYGRA-WRKIEEHVG-SKTAVQIRSHAQKF 95 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.02E-16	45	99	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.949	46	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-9	48	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-17	49	98	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-12	50	98	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-13	51	94	IPR001005	SANT/Myb domain
CDD	cd00167	1.82E-9	53	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MITSTISSQE ENYVPQSNLG SKILLMTRVQ SEAGENHIPK IRKAYTITKQ RERWTEDEHK 60 RFLEALKMYG RAWRKIEEHV GSKTAVQIRS HAQKFFSKVV RETSTSNSIS AEPIEIPPPR 120 PKRKPSHPYP RKLVLPSRKE MPMEHQARST SPNSSFSEQD NHSPASVMSF VASDTIASAD 180 SATPKSSLSP ISSGNFADQV AVMPCENNAS QGGLLLPNSL PIAPSSVKLE LFSYKESSEK 240 EDVASTKVLK LFGKDLVVPR NPSDSSTCSG KSTSSDMGEG VLQAYRNASK SGDIAVATAD 300 YQTFFSADRS TNQVEKPVPL PWWIFFKGIN ISPFGKPQEK EILREDSSAD SNSDSVNRGE 360 TPEKNWEVEA ESGICSPSSD KDGQILEESS PKTLEPTSLE KRTSFDDGRK GFVPYKRCLS 420 KRDMQFSTIT SEERESQRIR LCL*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MITSTISSQE ENYVPQSNLG SKILLMTRVQ SEAGENHIPK IRKAYTITKQ RERWTEDEHK  60
RFLEALKMYG RAWRKIEEHV GSKTAVQIRS HAQKFFSKVV RETSTSNSIS AEPIEIPPPR  120
PKRKPSHPYP RKLVLPSRKE MPMEHQARST SPNSSFSEQD NHSPASVMSF VASDTIASAD  180
SATPKSSLSP ISSGNFADQV AVMPCENNAS QGGLLLPNSL PIAPSSVKLE LFSYKESSEK  240
EDVASTKVLK LFGKDLVVPR NPSDSSTCSG KSTSSDMGEG VLQAYRNASK SGDIAVATAD  300
YQTFFSADRS TNQVEKPVPL PWWIFFKGIN ISPFGKPQEK EILREDSSAD SNSDSVNRGE  360
TPEKNWEVEA ESGICSPSSD KDGQILEESS PKTLEPTSLE KRTSFDDGRK GFVPYKRCLS  420
KRDMQFSTIT SEERESQRIR LCL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675239.1	0.0	PREDICTED: protein REVEILLE 2 isoform X1
TrEMBL	A0A0K9R483	1e-177	A0A0K9R483_SPIOL; Uncharacterized protein
STRING	XP_010675239.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	4e-40	MYB_related family protein

Link Out ? help Back to Top
Phytozome	AHYPO_003313-RA