PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003399-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 310aa    MW: 34208.6 Da    PI: 6.4007
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003399-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.1e-12177213440
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                      +kr rr+ +NR++ArrsR+R++a+++eLe  vk Le 
  AHYPO_003399-RA 177 VKRLRRMVSNRLSARRSRKRRQAQQQELEMQVKLLED 213
                      79********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-4170248IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-9173214No hitNo description
PROSITE profilePS502179.404176214IPR004827Basic-leucine zipper domain
PfamPF001702.6E-10176213IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.39E-9177216No hitNo description
CDDcd147021.11E-11179212No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNNPHKQTLF KTGNNPMKRS PSELVLEALV NNKSMATIKD HHHDHHTPLF DTNYNYHHHH  60
NHQQHDVADY FDPTAGVASA DEHLTFDFKT QQDTINSFGS GGTFDQQTVS WHQNLTPQQP  120
CPSATIDSQS SICAGSPTST LVYKPKVGDN QVSYSSDDDE GELEAGQCEQ SDDPLQVKRL  180
RRMVSNRLSA RRSRKRRQAQ QQELEMQVKL LEDRVTRGTL NHILQTTLSS PSPQLAASAQ  240
NLSRMVNAIA PTMMVQGQEA SFDGAFPWPN PSIENENNIA NLHDSNATSG SIASNNTIGG  300
VSCVTGLWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190197RRSRKRRQ
2192197SRKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744154.11e-84basic leucine zipper 9-like isoform X1
TrEMBLA0A0K9RVQ15e-67A0A0K9RVQ1_SPIOL; Uncharacterized protein
STRINGXP_010669482.11e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.16e-09basic leucine zipper 9