PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003410-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 78aa    MW: 9131.18 Da    PI: 8.9284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003410-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.3e-14958148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     r +WT+  d+ + +a  ++ ++   +W+ Ia+++g g+t +++k+r+q +l
  AHYPO_003410-RA  9 RSSWTPKQDKAFEKALDKYDKDtpdRWHNIAKEVG-GKTVEDVKNRYQELL 58
                     789********************************.************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.897762IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.5E-9863IPR009057Homeodomain-like
SMARTSM007173.6E-13860IPR001005SANT/Myb domain
PfamPF002494.7E-12958IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-151066IPR009057Homeodomain-like
CDDcd001678.96E-101158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MERNSNGTRS SWTPKQDKAF EKALDKYDKD TPDRWHNIAK EVGGKTVEDV KNRYQELLED  60
INKIESGRVP FPYNWKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-23472371RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690880.12e-30PREDICTED: protein RADIALIS-like 2
RefseqXP_019107549.12e-30PREDICTED: protein RADIALIS-like 2
SwissprotQ1A1734e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0K9S0L13e-36A0A0K9S0L1_SPIOL; Uncharacterized protein
STRINGXP_010690880.16e-30(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-30RAD-like 6