PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003415-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 281aa    MW: 31646.4 Da    PI: 4.4309
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003415-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.61.6e-1336111279
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                      Wt q  l L++ +  +e + +++ +  ++W  vs+ + + g+ r+++qC+ kw++l  +y  +ke+ ++  +++ s +
  AHYPO_003415-RA  36 WTVQDMLILVNEVAAVEGECQNALSTHQKWTIVSETCTALGVVRNANQCRRKWQSLLADYHLVKEWTSSS-ATD-SYW 111
                      *******************************************************************994.333.356 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-435102IPR009057Homeodomain-like
PfamPF138371.6E-935108No hitNo description
PROSITE profilePS500906.5743692IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNYIEETMMD ASVDQPAEPT SRSRCTRSHL QEAAVWTVQD MLILVNEVAA VEGECQNALS  60
THQKWTIVSE TCTALGVVRN ANQCRRKWQS LLADYHLVKE WTSSSATDSY WSLGSESRIQ  120
AGLPSDFDKD LYKAIEDFTK APDRIDTDPE CDPEAADVDM LNTEEPGPKP RKRRRRSVPH  180
KRLIAEWKRP VLESENVKPE DLILEGMDQI LAAKLAENAE LINAILAEND DEDINEDFTY  240
LRDDEGFQIE KARRKADKLV ACLGDLANNL EHLCGLVEKG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173PKPRKRR
2170174RKRRR
3170176RKRRRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021729248.11e-137uncharacterized protein LOC110696275
RefseqXP_021729249.11e-137uncharacterized protein LOC110696275
RefseqXP_021731527.11e-137uncharacterized protein LOC110698416
RefseqXP_021731528.11e-137uncharacterized protein LOC110698416
TrEMBLA0A0K9R3V41e-125A0A0K9R3V4_SPIOL; Uncharacterized protein
STRINGXP_010669503.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-43sequence-specific DNA binding transcription factors