PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003454-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 188aa    MW: 22026.3 Da    PI: 5.927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003454-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.33.8e-16129454128
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWk.atgkdkevlsk......kgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                      + +e y F+k+++ky+++++ +rat+sgyW    g++k+++        +   +g+kkt vf+ gr+p+ +  t+W+mhey+l
  AHYPO_003454-RA  12 SMEEKYVFTKKETKYKNKSQYKRATRSGYWDiINGSEKHMFPPpntnlgRMIMKGIKKTWVFHFGRSPNNQhPTHWFMHEYSL 94 
                      55689*************************966788888888776555555559*********9988876637********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.9011119IPR003441NAC domain
SuperFamilySSF1019411.22E-1914119IPR003441NAC domain
PfamPF023656.5E-91694IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MHDSFMHVIG DSMEEKYVFT KKETKYKNKS QYKRATRSGY WDIINGSEKH MFPPPNTNLG  60
RMIMKGIKKT WVFHFGRSPN NQHPTHWFMH EYSLALDVNH NYDSNYKIED WVVCHIFFNQ  120
RMEEEDEAIV LDDGHENYNL RTTSCMFNDM VLFNHSSTCS SSSSSSSNSI IEDSSNDLQS  180
DEESNYF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846193.15e-42NAC domain-containing protein 83
TrEMBLA0A0K9R1H01e-40A0A0K9R1H0_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-17NAC domain containing protein 32