PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003471-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 308aa    MW: 34082.3 Da    PI: 5.026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003471-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-051311701255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      RR++i +++  L+ ++P +    +k   Ka +L + ++Y++sLq
  AHYPO_003471-RA 131 RREKISERMKMLQAIVPGC----DKVTGKALMLDEIINYVQSLQ 170
                      9*****************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.185119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0039130175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-12130188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-7131174No hitNo description
Gene3DG3DSA:4.10.280.104.4E-13132184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAAFQQYPAS FLVDSVFLPN VSAIKTPEAF HDFYSSSQNS QHPLILHNQK GSSVDASSCL  60
EQLSFNERSS MEDKQRNESL SMADKADSSE QEVKQVKNKK QKEDKTVTKD DENEKKTTPK  120
EEPPKGYIHV RREKISERMK MLQAIVPGCD KVTGKALMLD EIINYVQSLQ NQVEFLSMKL  180
ASLDPMLYNF GLMDHDPMLF GTPQVINNVM ALPIALTQPN NGGSSIDPPQ SFANTTAMSC  240
STASSATTST FPGSIVDSSA NLGVFDQQEQ KPCLLPLQDA GSLYWGLNEQ QRQNIINQFG  300
SNLYSLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021743879.11e-121transcription factor bHLH137-like
TrEMBLA0A0K9Q9N11e-95A0A0K9Q9N1_SPIOL; Uncharacterized protein
STRINGXP_010678329.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-31bHLH family protein