PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003519-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

TCP

Protein Properties

Length: 228aa MW: 26268.2 Da PI: 6.9149

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003519-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.6	1e-29	63	188	18	135
TCP 18 RdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........kaaksaakskksqks 103 dRR+Rls+++a+ fF+Lqd LGfdk+s t+eWLl ++k ai+el + ++ s+s++++ +ss+++ + + +++k+++ s+ k+ AHYPO_003519-RA 63 EDRRMRLSLPIARPFFELQDTLGFDKASRTVEWLLMKSKSAIDELFQCKNGSPSSVTKCPRSSTSDDCEVEsviiqenvENSKTKKRSSTCVKK 156 69********************************************6665544422222222221111123344444555555566777777 PP TCP 104 aasalnlakesrakarararertrekmriknk 135 +++ ke+r++ar rarert ek++ +++ AHYPO_003519-RA 157 YEAKKRTTKEERKQARDRARERTLEKKQSRKV 188 777788999***************998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	20.257	46	107	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-28	64	185	IPR005333	Transcription factor, TCP
PROSITE profile	PS51370	9.102	165	182	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSNTSTFDYS FSLSGYLIDD INDQNYISSE EHTTNYLTSY YHLPSPLFYH EMDIFENPFG 60 NNEDRRMRLS LPIARPFFEL QDTLGFDKAS RTVEWLLMKS KSAIDELFQC KNGSPSSVTK 120 CPRSSTSDDC EVESVIIQEN VENSKTKKRS STCVKKYEAK KRTTKEERKQ ARDRARERTL 180 EKKQSRKVKE GGTSFGLGRD EDHVNVCGNW NPLISSLSYQ QSMDASQI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695622.1	6e-55	PREDICTED: transcription factor TCP18
TrEMBL	A0A0J8BBZ7	1e-53	A0A0J8BBZ7_BETVU; Uncharacterized protein
STRING	XP_010695622.1	2e-54	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	3e-17	TCP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_003519-RA