PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003523-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21036.3 Da    PI: 9.9102
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003523-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.49e-191051243
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      ien + r +t+ kR +g+lKKA EL +LCd++v+vii+ s+
  AHYPO_003523-RA 10 YIENPTTRRTTYRKRVKGLLKKARELKILCDIDVCVIIYNSN 51
                     59************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.189161IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-18160IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-12323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-213104IPR002100Transcription factor, MADS-box
PfamPF003197.0E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARKKTTLAY IENPTTRRTT YRKRVKGLLK KARELKILCD IDVCVIIYNS NSNNDQRPTP  60
TPTPTPVVWP SSEAEVKRII SNYQLRSEFD QSHRKVDQKS YIQQCVNKVV DKLMKIQGNN  120
RDLEMENLIS QLFLGKPLEE VKPSDIFDLL SAINDKLKMV DHQISVLKQV QKVDDGQTHL  180
MP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-18AGAMOUS-like 80