PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003548-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 554aa    MW: 60472.3 Da    PI: 8.4467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003548-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.13.2e-18253302255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR +iN++f+ Lrel+P++    ++K +Ka+ L +++eYI++Lq
  AHYPO_003548-RA 253 RSKHSATEQRRRCKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQYLQ 302
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.1E-23248323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.641251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-18252320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-15253305No hitNo description
PfamPF000109.2E-16253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-13257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MELPQSRPFG ATQARKATHD FLSLYTHPSL QQDPKSSHGA GGLPKTHNFF QPLEGQEKSL  60
SKEDNLVDIN VKPQPAAPPT SVVEHVLPGG IGTYSISQIS YYNSRLPKPE DSIFSVTPVT  120
SNDKNDENSN CSSYTGSGFT LWDESAVRRG NTGKENLGDV NVVKEPTIKM GHWPSQSSSN  180
HPSSVSPMSS AQTHVQKNPS FMEMIKSAKG PHLMDEEDEE DMSIKKESNS SQKGEIRVKV  240
GGQSSDQKPI TPRSKHSATE QRRRCKINDR FQMLRELIPH SDQKRDKASF LLEVIEYIQY  300
LQEKVNRYEG SYPGWNSEPP KLNHWRNSHV ATDSFVDQSR VLNGISPVMM FGSKVDEKAA  360
AISLNIPRNS QNLADSSTTN TINGKTAHQQ PIITNKAGSL CSPLQPDINV PIISSGAMTQ  420
PPLRLPSEGG NASFPQLQLW QSKNSASERS VTPDKLKDQE LALEGGTINI SSIYSQGLLS  480
TLTRALQSSG VDLSQASISV QVDIGKRANN GQNSHHAAGK GAEASIPNQN LLHARGENTS  540
SESDHTVKRL KKG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855278.10.0transcription factor BIM2-like isoform X1
TrEMBLA0A0K9R0V30.0A0A0K9R0V3_SPIOL; Uncharacterized protein
STRINGXP_010678382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.45e-95bHLH family protein