PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003559-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28043.7 Da    PI: 7.4467
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003559-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.6e-27146651
                     HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gkl+e++s
  AHYPO_003559-RA  1 KINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLFEFCS 46
                     68******************************************96 PP
2K-box92.38.2e-31711629100
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      l++++++  +qe+ kLk ++e Lq++qR+llGedL +L++keL+qLe+qLe slk+iRs+K++ ++ q+ +l+++e++l e+nk+L k+lee
  AHYPO_003559-RA  71 LNASQSQATYQEYLKLKTRVEFLQQSQRNLLGEDLAPLNVKELEQLEHQLELSLKQIRSTKTQQMMVQLADLRRREHALIENNKNLIKELEE 162
                      778999**********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002652.82E-34165No hitNo description
SMARTSM004322.2E-24147IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.371148IPR002100Transcription factor, MADS-box
PfamPF003194.6E-23244IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-26263IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-191025IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-192546IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2573160IPR002487Transcription factor, K-box
PROSITE profilePS5129715.39876166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
KINRQVTFAK RRNGLLKKAY ELSILCDAEV ALIIFSNRGK LFEFCSSSSM LKTIEKYQRC  60
SYGALEDDGI LNASQSQATY QEYLKLKTRV EFLQQSQRNL LGEDLAPLNV KELEQLEHQL  120
ELSLKQIRST KTQQMMVQLA DLRRREHALI ENNKNLIKEL EEHSPQFPEQ LGWEGDNHHH  180
HHGDQQNIPF NRIITHQSDH SFFQPLSSNP PPQIGYHSMG SSGVSMATTS QHVNAYNFHG  240
WML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-22781561997Developmental protein SEPALLATA 3
4ox0_B3e-22781561997Developmental protein SEPALLATA 3
4ox0_C3e-22781561997Developmental protein SEPALLATA 3
4ox0_D3e-22781561997Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1298756e-44AF129875.1 Capsicum annuum MADS box transcription factor MADS1 (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678363.11e-133PREDICTED: MADS-box protein CMB1
SwissprotQ8LLR21e-93MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A0J8CB491e-131A0A0J8CB49_BETVU; Uncharacterized protein
STRINGXP_010678363.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.14e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]