PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003717-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 355aa    MW: 39669.5 Da    PI: 8.686
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003717-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.4e-33226283260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkk+e+s  +++++ei+Y+g+Hnh+k
  AHYPO_003717-RA 226 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPMKKKIEKSL-EGQITEIVYKGSHNHPK 283
                      8****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-28217284IPR003657WRKY domain
SuperFamilySSF1182901.7E-24219284IPR003657WRKY domain
SMARTSM007747.5E-35225283IPR003657WRKY domain
PROSITE profilePS5081122.584226284IPR003657WRKY domain
PfamPF031068.5E-25226282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGFSNGTLDS YNFMSSSSFT DLLNSGAEDK LVVGNGLQKR SLSDRIADRT GSGIPKFKSL  60
PPPSIPISSP PVSPSSYFAI PPGLSPTDLL DSPVLLSSSN VLPSPTTGAF VAQAWNYTNN  120
NFNNKQEDIS KYSEFTFQTQ FRPNNDSSTM FQSSFPRDQN QQKSWGFANQ NKQDDQSSNS  180
IKSMVKSEFP TSQSENFNQG NIVKYEQDQN SSFQPAQYIK DHRKSDDGYN WRKYGQKQVK  240
GSENPRSYYK CTFPNCPMKK KIEKSLEGQI TEIVYKGSHN HPKPVNTRRS SSTTYQNCVA  300
PTNDYNDHSS VQQRSSSGQM DSVATPEISS ISMADDEVDM GSQSQRREER LRMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-152262841574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685944.11e-154PREDICTED: WRKY transcription factor WRKY24
TrEMBLA0A0K9QDZ71e-136A0A0K9QDZ7_SPIOL; Uncharacterized protein
STRINGXP_010685944.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.18e-38WRKY DNA-binding protein 33