PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003726-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 322aa MW: 34798 Da PI: 9.0418

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003726-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.2	1e-41	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ael AHYPO_003726-RA 59 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPENQRADAANSLVYEANIRLRDPVYGCMGAISALQQQIQALQAEL 152 7********************************************************************************************* PP DUF260 95 allkee 100 +ll++e AHYPO_003726-RA 153 NLLRAE 158 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.68	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.0E-42	59	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
EDEIRKRVKR KIDGANENKS MVASSCYDNH LQIASTGRRH LMGVGPTPPP GTTLNTITPC 60 AACKLLRRRC AEECPFSPYF SPHEPQKFAA VHKVFGASNV SKLLMEVPEN QRADAANSLV 120 YEANIRLRDP VYGCMGAISA LQQQIQALQA ELNLLRAEII KFKYRQAANH LISATNNSNN 180 PTINHHHPTN NSNNPTINHH HPTNNSNNPT INHHHPTNNS NNPTINHHHP NNNSLVNSLA 240 ATVIAASMPP QVRSPPHQQP PPPPPQATPP PPAPSVSVVS TPPLSGAASF YTPPSPPALS 300 NTLTNAGFAS ISNEHSVPFL D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	52	162	4	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	52	162	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685965.1	1e-100	PREDICTED: LOB domain-containing protein 15
TrEMBL	A0A0K9RA50	2e-85	A0A0K9RA50_SPIOL; Uncharacterized protein
STRING	XP_010685965.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-55	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	AHYPO_003726-RA