PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003796-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 232aa    MW: 26052.1 Da    PI: 4.7622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003796-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.4e-1465113355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr  +  g+Wv+e+r+p   +k+ r++lg++  ae Aa+a++ a+++l+g
  AHYPO_003796-RA  65 FHGVR-ERDGGKWVCEVREP---NKKSRIWLGTYPNAELAARAHDVAALALRG 113
                      89**9.5559******9998...347*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.72E-2663123No hitNo description
PfamPF008478.1E-1063113IPR001471AP2/ERF domain
PROSITE profilePS5103221.03564121IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1864123IPR016177DNA-binding domain
SMARTSM003803.1E-2464127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2764123IPR001471AP2/ERF domain
PRINTSPR003672.8E-66576IPR001471AP2/ERF domain
PRINTSPR003672.8E-687103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNTLAVSFQL PCPYSPPLIQ GESEDTDVSS DSPNNNNLFT EKSTCLSQKR KAGRKKFKET  60
RHPIFHGVRE RDGGKWVCEV REPNKKSRIW LGTYPNAELA ARAHDVAALA LRGDGAALNF  120
PDSAQLAPRP KSSSAEDIRL AALQATRCDV GKREVKEESS RRFDGEIVRN GDEEEDFKEL  180
FIDEEAIFNM PSYFDCMAVG MLLTPPSLKR GIDWDEVDDY DNTSYMDLNL W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-12621271278Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754496.16e-94LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI41e-53DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z51e-53DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0K9QEG96e-95A0A0K9QEG9_SPIOL; Uncharacterized protein
STRINGXP_010686196.12e-88(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-38C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]