PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003852-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 778aa    MW: 88256.4 Da    PI: 6.8364
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003852-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP114.75.2e-36130205277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      Cqv++C+ad+ e+k yhrrh+vC v+++a++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k+
  AHYPO_003852-RA 130 CQVPDCQADIRELKGYHRRHRVCLVCANASSVLLHGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKS 205
                      ************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-27127191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.077127204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.76E-33128207IPR004333Transcription factor, SBP-box
PfamPF031102.1E-26130204IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MELPSLTTTD EQLPTPFEWS DIFDFTIDDQ LLLNLDVHDQ QHQLQSPIVL PPPNVDSEQS  60
QKPPTVSPPQ TSSSDRVRKR DPRMVCENFL AGRVPCACPE LDAQVMEEEE EAAPGKKRSK  120
MGRTPGIAKC QVPDCQADIR ELKGYHRRHR VCLVCANASS VLLHGETKRY CQQCGKFHVL  180
SDFDEGKRSC RRKLERHNNR RRRKSVGSRG ALDKEYQGDL HTEDAFSDGE AGKDNSWSSN  240
QITEREDSKD GTLSNLCSAL ESQNIESDSI VTSTQVDKVI NNLERDCTPP SENKTAYTSV  300
CPTGRISFKL YDWNPAEFPR RLRHQIFQWL ASMPVELEGY IRPGCTILTI FLSMPQNMWV  360
KLIDDPVSYI RSSVGFGGML SGRGVAMIYL NDMSFRIIRD GASVMKVKVA VRAPKLHYVY  420
PPCFEAGKPM NLLACGSNLL QPKFRSLISF AGKYLAHDYY VAFPREKEDE SASYCDHQFF  480
RIYVPHTDPS YFGPAFIEVE NECGLSNFLP ILIGDEHVCS EIKTIHQKYD CSYCRKKFQN  540
RPSGSSDDTC EVSCSRQAAF SEFMLDVAWL LKQPRSEKLH RVLTSFQIQR FNCLLKFLIS  600
NKSTSILEKI LQSLENVCDE MESSDAADVT DTDRRLFKKC IAHARDFLLQ SVHENELVVC  660
QARTCAQKDY RCLENFPCHD DLSYDRPVCQ VTDYSPSDGE SVSLVNGELT MKITENKEWS  720
RNSCNHMMSK KLINSRPFIY AIAVVAFCFG LCAVVLHPYK VTKLAVTIRR CVLNDAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-39127210386squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190202RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849148.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A0K9RZG70.0A0A0K9RZG7_SPIOL; Uncharacterized protein
STRINGXP_010666331.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7