PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003879-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 471aa    MW: 49703.4 Da    PI: 7.912
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003879-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.4e-124470127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +f+rtG+C yGdrC+F+H++
  AHYPO_003879-RA 44 PGEPDCIYFLRTGFCGYGDRCRFNHPR 70
                     5789*********************96 PP
2zf-CCCH36.96e-1294118327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C++++rtGtCk+G +Ck++H++
  AHYPO_003879-RA  94 QPICQYYLRTGTCKFGTSCKYHHPK 118
                      799********************96 PP
3zf-CCCH28.91.9e-09139163226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C ++ +tG+Ck+G +CkF+H+
  AHYPO_003879-RA 139 GEKECTYYIKTGQCKFGMTCKFHHP 163
                      7899********************8 PP
4zf-CCCH35.71.4e-11293318126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++++C+++++tG Ck+G++Ck++H+
  AHYPO_003879-RA 293 PGQPECQHYLKTGDCKFGSSCKYHHP 318
                      5789*********************8 PP
5zf-CCCH35.91.2e-11339365127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++t+ C+++a+ G Ck+G++CkF H++
  AHYPO_003879-RA 339 PGTPTCNYYAQHGVCKFGPTCKFDHPM 365
                      68***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1694371IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-74370IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-104570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-64871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-64970IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-691118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.06191119IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-994118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-596117IPR000571Zinc finger, CCCH-type
SMARTSM003560.0045137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6139166IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6139163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544292320IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5292319IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9294318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5296319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474338366IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6338365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6338368IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8339365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4343363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEHEVTHSDP SPDWETHGPQ SELQDSMWKL GLEDSSSSPY PERPGEPDCI YFLRTGFCGY  60
GDRCRFNHPR DRSISMVVGS GRGGGGDYPE RAGQPICQYY LRTGTCKFGT SCKYHHPKQG  120
ATPVNQFALN VLGYPLRPGE KECTYYIKTG QCKFGMTCKF HHPAPSIVPV PTATPPTPLT  180
TPAIYSTPTA APQPYGMVTG NWPVPRPSMV PGSYIQGPYG PMLFSSGVAP LPGWGPHTGT  240
TSMTTPNTQS VGAGQYYGLV PPLPSAPAYA GRYQVISSSP SNVSNEHSYP QRPGQPECQH  300
YLKTGDCKFG SSCKYHHPAK WAAPETSSTL SPMGLPLRPG TPTCNYYAQH GVCKFGPTCK  360
FDHPMGTLSY SPSASSLSDM PVAPYPVGSS IGTLAPSSSS SDLHAEVMSG FNKESATTLS  420
SSVGIANGSV GSILSKSGST QSGLQQSGQS STSATSSSSK GGTGDGHAPC *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666382.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-144C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0J8B4L20.0A0A0J8B4L2_BETVU; Uncharacterized protein
STRINGXP_010666382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-126C3H family protein