PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004018-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Trihelix

Protein Properties

Length: 384aa MW: 42676.1 Da PI: 7.2207

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004018-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.8	1.8e-20	44	135	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt +e+ aLi+a+re++ +l+rg+l++++W+ev++ + + ++++qC++k+e+l+kry++ +++k+ + + ss+++yf++++a AHYPO_004018-RA 44 CWTPDETAALIDAYREKWYSLSRGNLRAAHWQEVADEIhrvcPDVLPPKTAVQCRHKMEKLRKRYRADLQRAKSIpHHRFSSSWVYFNKMDA 135 8********************************99855545566689****************99999978999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-20	43	136	No hit	No description
PROSITE profile	PS50090	6.388	45	105	IPR017877	Myb-like domain
SMART	SM00595	1.4E-10	52	141	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MASPPPPENL DPPFAVPLVL PPPQQPHLQP EPQPPSSRRL PPPCWTPDET AALIDAYREK 60 WYSLSRGNLR AAHWQEVADE IHRVCPDVLP PKTAVQCRHK MEKLRKRYRA DLQRAKSIPH 120 HRFSSSWVYF NKMDAMEKGD SIVAVDANNI NEGFDNVVCV DDEDGGDYDE GNDGDEDFNG 180 GFVKEFKEFQ RNGLRIRIAN SNPNPNPKKM NYGGFDYSPS ANPNPNPSLG FGGKKFNEFD 240 TPPRYNEGVR YATRIVKNEG FNGGGGSGSG GVGSSSGMGM GMNISVAAKK KRSALGKRER 300 DRESGGGGSG VGKEMVEAIR LLGEGFMHVE RMKMDMVRES ERLPKSIILQ FQDRYCSRDA 360 MFISVILHIG LLNIMVSDYT TEW*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MASPPPPENL DPPFAVPLVL PPPQQPHLQP EPQPPSSRRL PPPCWTPDET AALIDAYREK  60
WYSLSRGNLR AAHWQEVADE IHRVCPDVLP PKTAVQCRHK MEKLRKRYRA DLQRAKSIPH  120
HRFSSSWVYF NKMDAMEKGD SIVAVDANNI NEGFDNVVCV DDEDGGDYDE GNDGDEDFNG  180
GFVKEFKEFQ RNGLRIRIAN SNPNPNPKKM NYGGFDYSPS ANPNPNPSLG FGGKKFNEFD  240
TPPRYNEGVR YATRIVKNEG FNGGGGSGSG GVGSSSGMGM GMNISVAAKK KRSALGKRER  300
DRESGGGGSG VGKEMVEAIR LLGEGFMHVE RMKMDMVRES ERLPKSIILQ FQDRYCSRDA  360
MFISVILHIG LLNIMVSDYT TEW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021850858.1	2e-89	trihelix transcription factor ASIL2-like
TrEMBL	A0A0K9S3N9	5e-88	A0A0K9S3N9_SPIOL; Uncharacterized protein
STRING	XP_010690969.1	6e-83	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-41	Trihelix family protein

Link Out ? help Back to Top
Phytozome	AHYPO_004018-RA