PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004074-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 78aa MW: 8650.56 Da PI: 8.9662

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004074-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.7e-10	9	56	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 WT+ + + +a + + ++ +W+ +ar +g g+t+ ++k ++ ++l AHYPO_004074-RA 9 TWTPKQNKAFERALAIYDKDtpdRWHNVARAVG-GKTAQEVKKHYEDLL 56 7******************************.*********8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.597	2	56	IPR017877	Myb-like domain
SMART	SM00717	8.2E-9	6	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-5	8	60	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-13	8	63	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-7	9	56	IPR001005	SANT/Myb domain
CDD	cd00167	5.59E-8	9	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MSSQGSGSTW TPKQNKAFER ALAIYDKDTP DRWHNVARAV GGKTAQEVKK HYEDLLEDIK 60 SIEAGQVPFP NYRNTGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-38	2	76	3	77	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690880.1	6e-48	PREDICTED: protein RADIALIS-like 2
Refseq	XP_019107549.1	6e-48	PREDICTED: protein RADIALIS-like 2
Swissprot	Q58FS3	1e-37	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A0K9RRG7	3e-45	A0A0K9RRG7_SPIOL; Uncharacterized protein
STRING	XP_010690880.1	2e-47	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	9e-36	RAD-like 6

Link Out ? help Back to Top
Phytozome	AHYPO_004074-RA

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]