PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004115-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 251aa    MW: 27148.3 Da    PI: 9.4323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004115-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-203585155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++ a++ ++g
  AHYPO_004115-RA 35 THFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAARAYDDAARTFRG 85
                     589*******.**********864...6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-223593No hitNo description
PfamPF008473.8E-133585IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-323693IPR001471AP2/ERF domain
SMARTSM003805.8E-383699IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-223694IPR016177DNA-binding domain
PROSITE profilePS5103223.4593693IPR001471AP2/ERF domain
PRINTSPR003675.3E-113748IPR001471AP2/ERF domain
PRINTSPR003675.3E-115975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAPKLNGGGG GPDNAVISLK VNVGNNSNVN SGKETHFRGV RKRPWGRYAA EIRDPTKKSR  60
VWLGTFDTAE EAARAYDDAA RTFRGAKAKT NFPLPSEIHL HHQNHINTNN NCSTRSPSQS  120
STVESSSHEK PSPTAPAMMV DSLPLDLNLT GSIAGVRFPF QQVRVSPMPA VGFPATMNQF  180
LYFHQHRPQY SSAKNNQQLI YSPVAQAPMM ACGVQSDSDS SSVVDLHQDL NSTPKGLGFD  240
LNQPPPLDLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-223694261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726494.12e-65ethylene-responsive transcription factor 4-like
TrEMBLA0A0K9R4L74e-63A0A0K9R4L7_SPIOL; Uncharacterized protein
STRINGXP_010686416.11e-63(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-27erf domain protein 9