PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004119-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 116aa    MW: 13279.7 Da    PI: 7.8574
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004119-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1344.8e-4228103277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      Cq+++C+adl+eak+yhrrhkvCe+h+kapvv+v+ ++qrfCqqCs+fhelsefD++krsCr+rLa+hnerrrk++
  AHYPO_004119-RA  28 CQADDCTADLTEAKRYHRRHKVCEFHAKAPVVIVNTIHQRFCQQCSKFHELSEFDDTKRSCRSRLAGHNERRRKNS 103
                      **************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-332389IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.89825102IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.73E-3826104IPR004333Transcription factor, SBP-box
PfamPF031101.6E-3228101IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
IKMEGYHENE YEEVIRGGSS LAASIVYCQA DDCTADLTEA KRYHRRHKVC EFHAKAPVVI  60
VNTIHQRFCQ QCSKFHELSE FDDTKRSCRS RLAGHNERRR KNSSRDVSED NSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-3718101184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726481.11e-54squamosa promoter-binding protein 1-like isoform X2
SwissprotQ387412e-38SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0K9QKM82e-51A0A0K9QKM8_SPIOL; Uncharacterized protein
STRINGcassava4.1_018710m3e-45(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-39squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]