PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004125-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 237aa MW: 25540.2 Da PI: 7.3695

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004125-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	93.3	1.9e-29	43	101	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + l cprC+s+n kfCyynn s+ qPry+C +CrryWt+GG rn+PvGg r++++s AHYPO_004125-RA 43 AGLVCPRCQSRNSKFCYYNNGSIYQPRYYCSECRRYWTEGGIQRNIPVGGPNRRQRRSA 101 5689**************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-17	35	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.6E-26	45	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.155	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MMSHQIEGSG KGKEIIGGNG SGGDDGCSGG GDGKKTKRPR PAAGLVCPRC QSRNSKFCYY 60 NNGSIYQPRY YCSECRRYWT EGGIQRNIPV GGPNRRQRRS ASDSSPVSVI VLALPPDQQR 120 QLLAATATAT ATATAASWVT AMHQPTLNAL PRPGFGTNLD LVSNSLQRPQ QQLNPYPHPG 180 VQQQQQEPQE DDDMSKMGDG SAFVDDWLDI SAFTNDIDNN NAQQVNHDLT GKEAST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	40	KRPRP
2	85	98	RNIPVGGPNRRQRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-26	Dof family protein

Link Out ? help Back to Top
Phytozome	AHYPO_004125-RA