PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004126-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 431aa MW: 49171.9 Da PI: 9.4027

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004126-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102.2	3.1e-32	42	100	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + l+cprC stn kfCy+nn +sqPry+C+ C+ryWt+GG+lrn+P+Ggg+rk+ ++s AHYPO_004126-RA 42 SGLPCPRCSSTNSKFCYFNNGKTSQPRYYCRDCKRYWTHGGSLRNIPIGGGCRKRGRHS 100 6789**************************************************87655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	26.795	44	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-28	44	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-20	46	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MSHQFAGNGK EIKEVVANGD GEGGEDGFSR GGDGNKPDAP PSGLPCPRCS STNSKFCYFN 60 NGKTSQPRYY CRDCKRYWTH GGSLRNIPIG GGCRKRGRHS SDASTSASVI VMRPLASLSL 120 KQRIRLVIST LAAAFISAIN NNDGMSDQMQ QMPSQQPTLP ATNMQYFGSN SGGLVRDRVN 180 QSCYANRVQM YNYYASVQQQ QQQQQQQFMR SLQQQPNNQP MQQLNMQFPQ QQITHPRPLY 240 QPNPPMEQVN LRPVHQHIQP VQQIYQHPMQ QHNQRPFQQR NQYPFQEPNQ YPFQQPNQYP 300 FQQPNQPMQQ YHMRAPQQSN LRPFQQVHQR AVHQPNLRPL QQANQPMVEH HVMQQRPIAA 360 APQNEHQLFN YPNAVVREMI RDPPSITLDD WIIINNPSAE LLVDNNACAS TSNNLNQEDN 420 NHLADKLGTR *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MSHQFAGNGK EIKEVVANGD GEGGEDGFSR GGDGNKPDAP PSGLPCPRCS STNSKFCYFN  60
NGKTSQPRYY CRDCKRYWTH GGSLRNIPIG GGCRKRGRHS SDASTSASVI VMRPLASLSL  120
KQRIRLVIST LAAAFISAIN NNDGMSDQMQ QMPSQQPTLP ATNMQYFGSN SGGLVRDRVN  180
QSCYANRVQM YNYYASVQQQ QQQQQQQFMR SLQQQPNNQP MQQLNMQFPQ QQITHPRPLY  240
QPNPPMEQVN LRPVHQHIQP VQQIYQHPMQ QHNQRPFQQR NQYPFQEPNQ YPFQQPNQYP  300
FQQPNQPMQQ YHMRAPQQSN LRPFQQVHQR AVHQPNLRPL QQANQPMVEH HVMQQRPIAA  360
APQNEHQLFN YPNAVVREMI RDPPSITLDD WIIINNPSAE LLVDNNACAS TSNNLNQEDN  420
NHLADKLGTR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	5e-27	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	AHYPO_004126-RA