PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004169-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 65aa    MW: 7311.21 Da    PI: 4.9091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004169-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.47.1e-201561148
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                     lppGfrFhPtdeel+v+yLk+k+++++l++ ++i+evd+yk++Pw+Lp
  AHYPO_004169-RA 15 LPPGFRFHPTDEELIVHYLKRKASSSPLPV-SIIAEVDLYKFDPWELP 61
                     79****************************.89**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-22763IPR003441NAC domain
PROSITE profilePS5100523.1611564IPR003441NAC domain
PfamPF023653.9E-91657IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MESTDSSNTQ PYPQLPPGFR FHPTDEELIV HYLKRKASSS PLPVSIIAEV DLYKFDPWEL  60
PSHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-2214641464Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686575.12e-36PREDICTED: NAC transcription factor 25
SwissprotQ8GY422e-27NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0K9QEW33e-34A0A0K9QEW3_SPIOL; Uncharacterized protein
STRINGXP_010686575.18e-36(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.19e-30NAC domain containing protein 25