PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004219-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 289aa    MW: 32931.4 Da    PI: 9.7842
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004219-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.81.9e-151050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +i n+s r+ t+ kR+ g+lKK  EL +LCd++++ i++s+
  AHYPO_004219-RA 10 FIVNDSARKATYKKRKRGLLKKMDELTTLCDVKACAIMYSP 50
                     799************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.61149IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-19160IPR002100Transcription factor, MADS-box
CDDcd002661.09E-16285No hitNo description
SuperFamilySSF554552.09E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-151050IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTRKKVKLAF IVNDSARKAT YKKRKRGLLK KMDELTTLCD VKACAIMYSP YEVRPVVWPG  60
PSGAREVISS FKRLPEMEKV KKMVSQEEFL RQRITKAHEQ LKRQQKENRE KEMTQIMYQC  120
LSGKSLQNLS MLDLSDLSWV INQHLGEINK RIEFLKKENP NPNPNPNPNP NPNPNYHNPN  180
ENNTNNNNII SSNYVGNNDQ GGYDLTHAQM MAQPWPSFMD MLNSTINHDP HHQLHPHHGM  240
GMGMSGGNGG ASSSNNNSNM NMMMMMGQFG DYHGHGVNPS LWSNNYYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIVNDSARKATYKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107671.11e-107PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-54AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0K9QV842e-97A0A0K9QV84_SPIOL; Uncharacterized protein
STRINGPOPTR_0005s00420.12e-71(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-56AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]