PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004220-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 315aa MW: 34793.1 Da PI: 6.4413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004220-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.1e-05	206	243	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L AHYPO_004220-RA 206 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 243 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.074	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-12	204	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.32E-6	204	247	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.0E-9	208	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MNSNNHEDGS PSIAMTSSSN NSSDSSTITY EGTITTSFPI NSSASYLIQS LFDDFDDQSQ 60 APQSQSIPHH DHQQFINPSN FNSLDSTNHD HHHHQNPNQS PDILSQLQNN EIDEKINSLM 120 NNCHEQILGG HFSPTTLDNI RASLMNSLQS RSRGPTSSNQ KSKQSCGNFG SKVKCDSKSN 180 CSSKDQPQAK RPRIETPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHEAIDYI 240 KFLHDQVNVL STSYLKSGTA IQQQGYDDLK NNEEGKQDLR SKGLCVLPIS STYPMAQETP 300 VDFWTPTFGG TTFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021726287.1	1e-123	transcription factor bHLH112-like
TrEMBL	A0A0J8B6H7	1e-107	A0A0J8B6H7_BETVU; Uncharacterized protein
STRING	XP_010665766.1	1e-107	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	1e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_004220-RA