PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004235-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GeBP
Protein Properties Length: 407aa    MW: 45529.6 Da    PI: 4.6831
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004235-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.28.9e-32183274197
           DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      klfqrl+se+De+ +L G+i++ka++g++p +d+++f+ fvkk ++++v++sql++KirrLKkKf++ + k     ++++ +ehd+  f+lskk
  AHYPO_004235-RA 183 KLFQRLFSENDEVQILNGMIEYKARKGADPINDMEDFCAFVKKLLHVDVKRSQLMDKIRRLKKKFTNAKIK-----DKKIGNEHDKRLFDLSKK 271
                      579***************************************************************99988.....999*************** PP

           DUF573  95 iWg 97 
                      iW+
  AHYPO_004235-RA 272 IWD 274
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-27185274IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MARNKTLKPL TEDPPEPESS SDEETDNEQP QEEGSAGSSD EEQDLEPREG EGDDEEDEEE  60
EESEDDDDDE EEEPEQNPST PIQPSNTKKL TIINSKKPVQ DGSSDEDDPP VSKFKSVSKP  120
VPEVSPPPKS RSKPANTGSS TTAEKRPAEG DEKTGTAKRQ KKEKTAPGSG VGTPVVQEEG  180
SKKLFQRLFS ENDEVQILNG MIEYKARKGA DPINDMEDFC AFVKKLLHVD VKRSQLMDKI  240
RRLKKKFTNA KIKDKKIGNE HDKRLFDLSK KIWDDSVINT KDDKVSNGVV GDKDVVVKSA  300
SKPRAPKSKN DTVVTEKNKV VIHNGDTAEK GLVNSAMEED LDVGEMAVKE KVRKRALKKM  360
GEKGRAEIDE MWEKVAKAEW ELKMMREEAQ REETRRIMEA LGWVKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9RBK23e-61A0A0K9RBK2_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.15e-23DNA-binding storekeeper protein-related transcriptional regulator