PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004287-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 238aa    MW: 26972 Da    PI: 7.863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004287-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.3e-1552100354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h e+ErrRR+riN  ++ Lr+ lP++   ++ K++Ka+ L +A+ ++k L
  AHYPO_004287-RA  52 RSHCEAERRRRERINGHLAHLRTFLPSS---HNVKMDKATLLAEAIAHLKLL 100
                      58**************************...******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1444105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.94549100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1252100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1352103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-1255106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.22E-462103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MESRLIEVEN QGIIGFDSFM ANDNIESYWE MEEDKQKKEK HKAQTKNSAA LRSHCEAERR  60
RRERINGHLA HLRTFLPSSH NVKMDKATLL AEAIAHLKLL KKEATEATKG LLIPTDADEI  120
TVEPYNNNNI LQDCMAFKAS ICCVYKPELM SEIRQTLKGL KLTITNAEIC TLQGRMKNTL  180
ILTTCSHEHI IGVEMIQKAL YSAMDKISAA EEYLPTIMYA NKRRRVSFFE SSTSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762ERRRRE
2221225KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686302.12e-81PREDICTED: transcription factor bHLH30
RefseqXP_010686303.12e-81PREDICTED: transcription factor bHLH30
RefseqXP_010686305.12e-81PREDICTED: transcription factor bHLH30
RefseqXP_010686306.12e-81PREDICTED: transcription factor bHLH30
RefseqXP_019106643.12e-81PREDICTED: transcription factor bHLH30
TrEMBLA0A0K9QVB02e-54A0A0K9QVB0_SPIOL; Uncharacterized protein
TrEMBLA0A1S2YIM34e-54A0A1S2YIM3_CICAR; transcription factor bHLH106-like
STRINGXP_010686302.17e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-30bHLH family protein