PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004291-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 221aa    MW: 24623 Da    PI: 6.1629
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004291-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.3e-301472259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++++tY+ eHnh 
  AHYPO_004291-RA 14 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNTLVVTYSYEHNHA 72
                     69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-31974IPR003657WRKY domain
SuperFamilySSF1182904.18E-26974IPR003657WRKY domain
SMARTSM007742.0E-351373IPR003657WRKY domain
PROSITE profilePS5081131.8921474IPR003657WRKY domain
PfamPF031068.6E-261571IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEGSRFKGDC TPPSDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ VERSRTDPNT  60
LVVTYSYEHN HAWPISRNNH HNRHTTTTTT TIPTTLTSSS PSTVVGPTID DHPKPDENTT  120
TTQCSSSSDQ SILFPQSDHH DGMIPPTDHD LTWLSSDNHI LENNSFFTSF TDLDYMAKIF  180
PMREEDESLF ADLGELPECS VVFRKAANVV AGETWCGTTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-1915741879Disease resistance protein RRS1
5w3x_D6e-1915741879Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750470.12e-96probable WRKY transcription factor 65
TrEMBLA0A0K9RVF91e-89A0A0K9RVF9_SPIOL; Uncharacterized protein
STRINGXP_010686240.17e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-43WRKY DNA-binding protein 65