PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004336-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 406aa    MW: 46901.9 Da    PI: 5.471
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004336-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34141052102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d++++ ++sws+n++sf+v+++ +f++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F +gk +l++
  AHYPO_004336-RA  14 FLAKTYEMVDDPTTDPIVSWSSNSKSFIVWNPPDFSRDLLPRFFKHNNFSSFIRQLNTYGFRKVDPDQ---------WEFANDDFIRGKPHLMK 98 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  AHYPO_004336-RA  99 NIHRRKP 105
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-3812103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDDIQGSLNA LPPFLAKTYE MVDDPTTDPI VSWSSNSKSF IVWNPPDFSR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPD QWEFANDDFI RGKPHLMKNI HRRKPVHSHS SNNLHGQVNS  120
NPLTDSERQR YKDDIEHLKH EKEVFLMESQ RQQQEEQDLE SQVQLLRDRL QQMERRQYSF  180
ASFCARRLQR PELASIPPLV NNNRKRRVFR PDHFYDETNN EDSSICTIRT SRGSPNVRFG  240
LDFDPELLEM MEASLHFWEN AVEDLVNVQR NPTHEGFEST TSPKSPAISY TRLNADDLSD  300
SLRIDMNSEP SAAASVIPPD PASRLETESR TAKAMAQGVN DVFWEQMLTE NPGSSDVEEV  360
QSERNDSRLK EKDSRLLDHG RFWLGFRNPN SIPEHIGQLT PAGSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-221110317120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665682.10.0PREDICTED: heat stress transcription factor A-4c
SwissprotO494031e-104HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0J8B6M90.0A0A0J8B6M9_BETVU; Uncharacterized protein
STRINGXP_010665682.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-106heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]