PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004439-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 530aa    MW: 59040.3 Da    PI: 6.8494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004439-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.3e-08127155431
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C. CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.as 31 
                      +h e+Er+RR+++Ns+f  Lr+++P   +
  AHYPO_004439-RA 127 NHVEAERQRREKLNSRFYALRSVVPMgHF 155
                      799**********************8776 PP
2HLH444.1e-14357402454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++Ns+f  Lr+++P+      +K++Ka+ L  Av YI++L
  AHYPO_004439-RA 357 NHVEAERQRREKMNSRFYALRSVVPTV-----TKMDKASLLSDAVAYINEL 402
                      699***********************8.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-15572IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.85E-8118157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.75123179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-7126154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5127155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-6127151No hitNo description
SMARTSM003530.17129185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF142155.3E-25178286IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.96E-17353414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11357402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-14357406No hitNo description
Gene3DG3DSA:4.10.280.105.5E-18357416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.468462529IPR002912ACT domain
CDDcd048733.76E-5474529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDQNGGSIIA KSFNNGAYVW LSGAHTYDCE RVKEAWSYGV WTIVCIPIPN GVLELGSVEL  60
IKENLALIQQ AQYLDLLGST HQVQLNFNAT EEYDSDESIG LQKVVKKRGN MARPSTARND  120
KVITVANHVE AERQRREKLN SRFYALRSVV PMGHFQGIKP KKKPNFVIVQ DQLDEFDDGG  180
SSMDDVVTDA EWFYMTSPSR SYPVKQRASA NGGIGTLAKA FTTGSLVWLS GAHSIRSYNC  240
ERAKEAQSHG LLTFVCIPIP NGVLEFGSID LIQENWALIE KAHSQFGPMC NLQLGPTNVD  300
VTWSSTTTSG DVFGDSCLVG ATNLVQDSNE PTGRQRNVKK RGRKLSSVPE GQATVINHVE  360
AERQRREKMN SRFYALRSVV PTVTKMDKAS LLSDAVAYIN ELNEKINRLE SQIQKSMRAS  420
ISENDIAPLM SNQYSLSEIV DVINYRKIPL EVDVKVLGNE AMIRVQCENI NYPLARLMDV  480
LKQLKLQVHH ASVSTIEDMM VLDVVIVKVP WELMNDVSMK VAIVTRLEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-22351412263Transcription factor MYC2
5gnj_B3e-22351412263Transcription factor MYC2
5gnj_E3e-22351412263Transcription factor MYC2
5gnj_F3e-22351412263Transcription factor MYC2
5gnj_G3e-22351412263Transcription factor MYC2
5gnj_I3e-22351412263Transcription factor MYC2
5gnj_M3e-22351412263Transcription factor MYC2
5gnj_N3e-22351412263Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767200.11e-166transcription factor MYC2-like
TrEMBLA0A0K9QWB91e-140A0A0K9QWB9_SPIOL; Uncharacterized protein
STRINGXP_010691764.11e-136(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-54bHLH family protein