PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004510-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 231aa    MW: 26159.8 Da    PI: 9.8325
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004510-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP69.94.7e-22108182278
                      -SSTT-----TT--HHHHHTT-.-HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkv.CevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      Cq+e+C+adl +ak+yhrrhk   ++h + + +++  + +   +  + fhel efDe+krsCrrrLa+hnerrrk+++
  AHYPO_004510-RA 108 CQAEKCTADLIDAKRYHRRHKSfSSAHFELSLAILIVVLR---KSHGLFHELAEFDETKRSCRRRLAGHNERRRKSSS 182
                      *********************6255677777666555544...45699***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-12103167IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.144105180IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.2E-17106183IPR004333Transcription factor, SBP-box
PfamPF031101.6E-11108179IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEFRKQEPNN NNNKRMMMMI QKDKSTSKST TTNNNPFKNS SSLSYDHHQD HDVDDHGSDH  60
DDEDEEMMGF STRIISSNND QDKKQKRLMG GRKSGNNERG GGIHMVNCQA EKCTADLIDA  120
KRYHRRHKSF SSAHFELSLA ILIVVLRKSH GLFHELAEFD ETKRSCRRRL AGHNERRRKS  180
SSESQGEGGP SSQTKGSNPN TQLERAANRS SQISYSGGNV SSIYKHFQLT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-161081791184squamosa promoter binding protein-like 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1U8A0754e-31A0A1U8A075_NELNU; squamosa promoter-binding protein 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.24e-17squamosa promoter binding protein-like 4