PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004553-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 213aa    MW: 23253 Da    PI: 5.4088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004553-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.2e-192776255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr+++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a+++a++++ g
  AHYPO_004553-RA 27 KFRGVRRRP-WGRFAAEIRDpFK----KTRVWLGTFDSAEDAARAYDKAAREFCG 76
                     89*******.**********662....5**********************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.092784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-322785IPR001471AP2/ERF domain
SMARTSM003807.6E-372790IPR001471AP2/ERF domain
PfamPF008471.2E-122776IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-222786IPR016177DNA-binding domain
CDDcd000185.78E-342786No hitNo description
PRINTSPR003672.4E-102839IPR001471AP2/ERF domain
PRINTSPR003672.4E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRKGRSTVKT TPNQIRSTPL DPSANVKFRG VRRRPWGRFA AEIRDPFKKT RVWLGTFDSA  60
EDAARAYDKA AREFCGSKAK TNFPLSPILP PSKLSPYDGV LVDNVEMIQR PASSGMSSTV  120
ESYNASQVIR IIQNNPAVMK NRVDDDCRSD CDSSSSVIDD VNGDGDEIGS SSVAVGFKQP  180
LPFDLNLPPI DGGDEGYFFG FDDDYKATAL CL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-212885361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021755679.13e-69ethylene-responsive transcription factor 3-like
RefseqXP_021849043.12e-69ethylene-responsive transcription factor 3
TrEMBLA0A0K9R8146e-68A0A0K9R814_SPIOL; Uncharacterized protein
STRINGXP_010675777.18e-57(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-20erf domain protein 9