PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004616-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 76aa    MW: 8414.81 Da    PI: 6.6155
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004616-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.2e-1214506197
                     E-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 61 ltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                       +GWk Fv +n Lk+gDf+vF+l+++s+  l++kv+
  AHYPO_004616-RA 14 GPTGWKTFVVDNMLKVGDFCVFELMENSDVALNFKVR 50
                     458**********************998888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.024155IPR003340B3 DNA binding domain
PfamPF023623.6E-101250IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-101653IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-81653No hitNo description
Gene3DG3DSA:2.40.330.103.9E-101653IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MIYLGKGSRI NKFGPTGWKT FVVDNMLKVG DFCVFELMEN SDVALNFKVR ILRGGFPSVF  60
ENKEAGTIDN PIVLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694215.13e-24PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0K9QEU52e-19A0A0K9QEU5_SPIOL; Uncharacterized protein
STRINGXP_010694215.11e-23(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-07B3 family protein