PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004688-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

WRKY

Protein Properties

Length: 190aa MW: 22091.8 Da PI: 9.4352

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004688-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.6	1.1e-32	110	168	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt+ gC+vkk+v+r ++d++vv++tYeg H+h+ AHYPO_004688-RA 110 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTKDEEVVVTTYEGIHTHP 168 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-32	95	168	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-29	102	169	IPR003657	WRKY domain
PROSITE profile	PS50811	29.631	105	170	IPR003657	WRKY domain
SMART	SM00774	5.5E-38	110	169	IPR003657	WRKY domain
Pfam	PF03106	9.6E-27	111	168	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MTSPFSTSSN IDNFTFSSNM TMIPHTPFSS SSSCLFDVYQ NGLMGMKSEM NNMDFPNDFH 60 GKTLLPSHEV QVGSSNNEIK ENNKKESNYK EKKIRRHRYA FHTRTQVDIL DDGYRWRKYG 120 QKAVKNNKFP RSYYRCTYGG CNVKKQVQRL TKDEEVVVTT YEGIHTHPVE RSTDNFEHIL 180 KQMHIYVPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	100	167	7	74	Probable WRKY transcription factor 4
2lex_A	3e-26	100	167	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695387.1	3e-80	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A0K9RFI3	3e-69	A0A0K9RFI3_SPIOL; Uncharacterized protein
STRING	XP_010695387.1	1e-79	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-58	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	AHYPO_004688-RA