PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004690-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

TCP

Protein Properties

Length: 282aa MW: 30304.4 Da PI: 8.2718

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004690-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.7	1.2e-39	35	121	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+k+++++++hTkv+gR RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+pai+++tgt++++as+ +a++s +++ ss + AHYPO_004690-RA 35 APKRSSNKDRHTKVDGRSRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPAIIAATGTGTIPASFLTASASGATQQGSSVS 121 789******************************************************************888554444444433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-34	40	276	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.714	41	95	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDDNRNPEEK QAVTINTQSP NKEDLQKKQQ NQQLAPKRSS NKDRHTKVDG RSRRIRMPAL 60 CAARVFQLTR ELGHKTDGET IQWLLQQAEP AIIAATGTGT IPASFLTASA SGATQQGSSV 120 SLGLHSKINE LRAGIEVGNR PNWANFGDNL GRSQVGASIW PSIGSGYAQV FDNCSGTNSN 180 LVSQSSSYVT NFQLQGVGLP TGNMGLLSFT PILTRGTQIP GLQLGLSQDG VIGQLYQQQQ 240 QQQQGHEHTD SGAAAAAVSA ETVHQQQQHL QSHSNDNSRE Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	Transfer from Glyma.19G095300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021758425.1	1e-117	transcription factor TCP20-like
Swissprot	Q9LSD5	5e-56	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A0J8BC90	1e-115	A0A0J8BC90_BETVU; Uncharacterized protein
STRING	XP_006484165.1	4e-82	(Citrus sinensis)
STRING	XP_006437974.1	4e-82	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-54	TCP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_004690-RA

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]