PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004695-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 289aa MW: 31915.4 Da PI: 10.308

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004695-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	90	134	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + + G+g+W+ I+r + k+Rt+ q+ s+ qky AHYPO_004695-RA 90 PWTEEEHKLFLLGLQTVGKGDWRGISRNFVKTRTPTQVASHAQKY 134 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.843	83	139	IPR017930	Myb domain
SuperFamily	SSF46689	7.25E-17	85	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-16	86	138	IPR006447	Myb domain, plants
SMART	SM00717	3.4E-10	87	137	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-10	89	134	IPR009057	Homeodomain-like
CDD	cd00167	6.19E-9	90	135	No hit	No description
Pfam	PF00249	6.7E-11	90	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAKEDSMVVN GGGEFMLFGV RVVVDSMRKS VSLNNLSQYE HRLDSSSSTN DVVPSDAPVT 60 NAGYASADEA VVNRSSTTAS ASRERKRGVP WTEEEHKLFL LGLQTVGKGD WRGISRNFVK 120 TRTPTQVASH AQKYFIRKSN INRRSRRRSS LFDITTDSVA VNQTDDQRIR KETNGGSQSI 180 PLQQQQQQSP KSENSSVIFS VQPQESIRFS SPSPPIYSYN RQQVVDYKMK MIETAATSSN 240 SSSKSMADFD LNLSLSLISS PDRANSRHSA FQVTQRFSNV GDSIISVA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678650.1	6e-90	PREDICTED: transcription factor MYB1R1
TrEMBL	A0A0K9QZ30	2e-84	A0A0K9QZ30_SPIOL; Uncharacterized protein
STRING	XP_010678650.1	2e-89	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	3e-51	MYB_related family protein

Link Out ? help Back to Top
Phytozome	AHYPO_004695-RA