PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004727-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

SBP

Protein Properties

Length: 946aa MW: 105671 Da PI: 6.162

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004727-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	39	2.2e-12	146	178	1	33
--SSTT-----TT--HHHHHTT--HHHHT-S-E CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvv 33 +Cqve+C a ls+akeyhrrhkvCevh+ka+++ AHYPO_004727-RA 146 VCQVEDCGAVLSKAKEYHRRHKVCEVHAKASKA 178 6*****************************986 PP
2	SBP	33.2	1.4e-10	180	204	54	78
T--SS--S-STTTT-------S--- CS SBP 54 efDeekrsCrrrLakhnerrrkkqa 78 efDe+krsCr+rLa+hn+rrrk+qa AHYPO_004727-RA 180 EFDEGKRSCRQRLAGHNKRRRKTQA 204 9*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.3E-13	140	190	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.409	144	202	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-21	145	207	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.1E-8	147	177	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.51E-8	713	830	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.28E-8	725	826	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.1E-7	725	826	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence Send to blast
MEQAHRFHAL GHNEMRAIGK RGLEWDLNDW KWDGDLFIAT PSNALSSDFQ DQQFIPVVQV 60 QGNSSNSSSS CSDDVQYGVD DGRRELGNKR RVIVIEEDSV EEVGPLTLKI GANSYSASDR 120 EKEVSNWEGT SGKKTKLAGG SSNRAVCQVE DCGAVLSKAK EYHRRHKVCE VHAKASKALE 180 FDEGKRSCRQ RLAGHNKRRR KTQADAAVQG NSINDEQTNS VLLISLLRIL SNMHANNGSN 240 QATDQDLTAQ LLRNLANPSM LHMGKGVSEI LLESQKLPNG GVSNDNVHSE KISSFFSNDN 300 RNLSKIIDQH APSSDLEIPR KELYAADSSV GKMQALQEPE NLFPIKNSPP GYSESTTGRM 360 KLNNFDLNDV YIDSDDGVED LERSPVNGNF VTGSSRTDRI VFKLFGKEPS DFPIVLRDQI 420 LDWLAHSPTD IESYIRPGCI ILTIYLRLAE SLWEELCSDL SSCLTRLFNV TDDTFWKSGW 480 VYVRVRNQIA FVHNGVVVLD TSLSLENSSC SRILSVMPIA VSMDEQAHFI VRGLNLSQST 540 TRLLCAIDGK YLDQEVSREL REDNNFAEEN ETEHASFSCS IPSITGRGYI EVEDLGLSSS 600 FFPFIVAEKD VCSEIRTLES VLKPKKTDEN AHEANKNMES WRQAMDFINE MGWLLHRSHL 660 KSRLADLDPS TVIFSFERFK WLMDFSMDHD WCAVVKKLLD ILIAGTVGSG EHSSLMVALL 720 EMGLLHKAVR RNSRSMVEQL LRYVPVHLSE EFAQAVDGGQ EKFLFRPDAK GPAGLTPLHV 780 AAGKDGSEDV LDALIDDPEK IGINVWKNAR DSTGATPEDY ARLRGHYAYI HAVQRKMHRT 840 SASGHVVLDI RGEPSIPTKH DRAVSFEVAR SASFALNQDS KLCDQKKLFA YYVKSARTSL 900 AYRPAMLSMV AIAAVCVCMA LLFKSMPNVV CLFQPFRWEL LNYGSS

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence Send to blast

MEQAHRFHAL GHNEMRAIGK RGLEWDLNDW KWDGDLFIAT PSNALSSDFQ DQQFIPVVQV  60
QGNSSNSSSS CSDDVQYGVD DGRRELGNKR RVIVIEEDSV EEVGPLTLKI GANSYSASDR  120
EKEVSNWEGT SGKKTKLAGG SSNRAVCQVE DCGAVLSKAK EYHRRHKVCE VHAKASKALE  180
FDEGKRSCRQ RLAGHNKRRR KTQADAAVQG NSINDEQTNS VLLISLLRIL SNMHANNGSN  240
QATDQDLTAQ LLRNLANPSM LHMGKGVSEI LLESQKLPNG GVSNDNVHSE KISSFFSNDN  300
RNLSKIIDQH APSSDLEIPR KELYAADSSV GKMQALQEPE NLFPIKNSPP GYSESTTGRM  360
KLNNFDLNDV YIDSDDGVED LERSPVNGNF VTGSSRTDRI VFKLFGKEPS DFPIVLRDQI  420
LDWLAHSPTD IESYIRPGCI ILTIYLRLAE SLWEELCSDL SSCLTRLFNV TDDTFWKSGW  480
VYVRVRNQIA FVHNGVVVLD TSLSLENSSC SRILSVMPIA VSMDEQAHFI VRGLNLSQST  540
TRLLCAIDGK YLDQEVSREL REDNNFAEEN ETEHASFSCS IPSITGRGYI EVEDLGLSSS  600
FFPFIVAEKD VCSEIRTLES VLKPKKTDEN AHEANKNMES WRQAMDFINE MGWLLHRSHL  660
KSRLADLDPS TVIFSFERFK WLMDFSMDHD WCAVVKKLLD ILIAGTVGSG EHSSLMVALL  720
EMGLLHKAVR RNSRSMVEQL LRYVPVHLSE EFAQAVDGGQ EKFLFRPDAK GPAGLTPLHV  780
AAGKDGSEDV LDALIDDPEK IGINVWKNAR DSTGATPEDY ARLRGHYAYI HAVQRKMHRT  840
SASGHVVLDI RGEPSIPTKH DRAVSFEVAR SASFALNQDS KLCDQKKLFA YYVKSARTSL  900
AYRPAMLSMV AIAAVCVCMA LLFKSMPNVV CLFQPFRWEL LNYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-17	138	201	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678887.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A0J8BDT7	0.0	A0A0J8BDT7_BETVU; Uncharacterized protein
STRING	XP_010678887.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	AHYPO_004727-RA

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]