PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004781-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 447aa    MW: 48490.9 Da    PI: 8.3906
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004781-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.5e-41167244178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+++
  AHYPO_004781-RA 167 CCQVEGCNLDLSSAKDYHRKHRVCENHSKSPMVVINGLERRFCQQCSRFHTLSEFDQKKRSCRRRLSDHNARRRKPKP 244
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-34162229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.958165242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-39166248IPR004333Transcription factor, SBP-box
PfamPF031102.5E-32168241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSTISMMELN AKSPFLWDWE NWVMLNPKGS EAPKKLQLVE SDIEGIEGFE GGSFYSSGGR  60
SDGGTGSELG YASSSKSSKS ASFDSSVQIK GNQFSLVNNS GTTRTSPTIE SSAASGESLI  120
ALELGKRTYF EDVSGANNVR NSARTSVPGD SVAKKNKSSS VGAESPCCQV EGCNLDLSSA  180
KDYHRKHRVC ENHSKSPMVV INGLERRFCQ QCSRFHTLSE FDQKKRSCRR RLSDHNARRR  240
KPKPEVIQFN SMRLTSSLYE GRNQLNFAFD QVPMLQTRHG TWDSANDSKV PLAKSGFLTS  300
MKSGGADELQ STHNGLQNPT TNKTSHVSTP LMPSKGASSD VFQRGLPVSM APSNMAAAQD  360
VRALSLLSTN SWGSCDPEPS VLNYPMHTNH NSLTQPLLTM DTVPLGSPQI SSEFWPADQA  420
AGSGPGSQTS TFQLFKAPNE SSFYLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271682411184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223240KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682751.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682752.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682753.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682754.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682755.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A0K9QHU30.0A0A0K9QHU3_SPIOL; Uncharacterized protein
STRINGXP_010682751.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-61squamosa promoter binding protein-like 2