PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004797-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 206aa    MW: 23836.2 Da    PI: 8.957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004797-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32126184159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+++fprsYYrCt +gC+vkk+v+r ++d+ v+++tYeg+H h+
  AHYPO_004797-RA 126 LDDGYRWRKYGQKAVKNNKFPRSYYRCTNQGCNVKKQVQRLSNDEGVIVTTYEGTHSHS 184
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33111184IPR003657WRKY domain
SuperFamilySSF1182902.75E-29118185IPR003657WRKY domain
PROSITE profilePS5081130.205121186IPR003657WRKY domain
SMARTSM007744.6E-38126185IPR003657WRKY domain
PfamPF031061.2E-26127183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEGYSIFSSS TNSSTSSPSN NTNFTIPNFS LNQQVSSTSY DNLDHFDHDH HHVGSLMMMM  60
DGHHQPSMAD HHQFIINDQN KRHQMVIMEN DNSNNNKMIK KGTTSSEKKA KKHRYAFQTR  120
SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTNQGCNVK KQVQRLSNDE GVIVTTYEGT  180
HSHSIERSTD NFEHILNQMQ IYTSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29116185776Probable WRKY transcription factor 4
2lex_A2e-29116185776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745345.15e-72probable WRKY transcription factor 75
TrEMBLA0A0K9QLB03e-64A0A0K9QLB0_SPIOL; Uncharacterized protein
STRINGXP_010682719.19e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.17e-57WRKY DNA-binding protein 75