PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004822-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 427aa    MW: 48103.9 Da    PI: 6.1357
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004822-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.1e-061253439
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     + C+ ++++ + l+C+ +   lC +C ++ H+       H++
  AHYPO_004822-RA 12 PFCDFCNQETAVLHCRADTAKLCITCDQHVHSAntlskkHQR 53
                     78*****************************65667777765 PP
2CCT64.43.5e-22378421144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a++RY eK+ktR++eK+irYesRKa+A++R RvKGrFvk +
  AHYPO_004822-RA 378 RDNAMQRYLEKKKTRRYEKHIRYESRKARADTRMRVKGRFVKIN 421
                      899**************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.8E-12956IPR000315B-box-type zinc finger
PROSITE profilePS5011910.495956IPR000315B-box-type zinc finger
CDDcd000215.32E-91256No hitNo description
PROSITE profilePS5101714.346378420IPR010402CCT domain
PfamPF062031.0E-16378419IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEENKLCTVR TPFCDFCNQE TAVLHCRADT AKLCITCDQH VHSANTLSKK HQRFPLCDTC  60
GSEYASVKYI THNLFICQDC SNSDLIKNAG FSSDDQTSVE CFSGCPSSSE LSVVLGLNLA  120
FDMMMMMRYG YDLRVPDPAN HIVDPTSPLG YDNDDCGVLI EKCFDGKKQS VIKQLLNLQK  180
KEKGFDSGNA GEIDSFLVPH NDGFLIGLDD NLNTNCNIIN DDFNHQSILF QQQQQKEVNF  240
PYNYNSNITR NVGGLPATAT NPTKQIWDFK SGLMRDDKEP GRLDNENDVR FIMDSYSSLQ  300
QETGSTSSKV VGDMYDTNGS STTEDIRLHN SKLQYPAASQ VPTTSESNNI HFMDQSIYVG  360
PDNVGRTKAN LEIMAQNRDN AMQRYLEKKK TRRYEKHIRY ESRKARADTR MRVKGRFVKI  420
NDAPPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682677.11e-108PREDICTED: zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A0K9RZ571e-103A0A0K9RZ57_SPIOL; Uncharacterized protein
STRINGXP_010682677.11e-107(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.24e-64B-box type zinc finger protein with CCT domain