PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004861-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 290aa    MW: 32296.6 Da    PI: 5.2476
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004861-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.67.8e-1752105250
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......k 50 
                      +pGfrFhPt+eelv +yL++k+egkk+++ e i+ +d+y+++Pw+Lp       k
  AHYPO_004861-RA  52 MPGFRFHPTEEELVEFYLRRKIEGKKFNV-ELITFLDLYRYDPWELPGtgnlqsK 105
                      79***************************.89**************943555442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.79151199IPR003441NAC domain
SuperFamilySSF1019412.09E-1651100IPR003441NAC domain
PfamPF023651.2E-75394IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAIATTMNLT NVDINSCSRN DNSFNNDNNK QQHHHRQQQQ QAEDEHEHDM VMPGFRFHPT  60
EEELVEFYLR RKIEGKKFNV ELITFLDLYR YDPWELPGTG NLQSKLSNSS KTASYSAAFR  120
VQTTYLQQQM EKVSETDASS STEVGTTAIS PLALQHSLTP PPPQTDPQPQ QVSGCGVGGS  180
GTSGEVEVSN GVITPLPIST SSMEDIHRLV EYQQVCFNQH FQQHHHHQQI QFESLNNSNS  240
PFLFSNYLFS PAQTGLVNNT LLPVPGPPPT AVGSGSTSLQ LPSASALWDW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682089.13e-35PREDICTED: NAC domain-containing protein 35
STRINGXP_010682089.11e-34(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-29NAC domain containing protein 35